DICROPROT 2000 is a hady utility that contains multiple methods designed for the estimation of protein sequence secondary structure derivation from circular dichroism experiments.
DICROPROT 2000 Crack+ Free Download
DICROPROT is a Windows-only application consisting of three core modules. Each of these modules performs a different aspect of protein sequence structure determination. The first module is “Fold” which assigns a secondary structure to a given protein sequence based on the amino acid sequences and the protein crystal structure. The Fold module is also capable of adding to a protein sequence, secondary structure if it is not found in the primary sequence.
The second module is “Calc” which performs the actual calculation of the protein’s structural characteristic. The Calc module is also capable of adding to a protein sequence, secondary structure if it is not found in the primary sequence.
The third module is “View” which can visualize the structure and calculate the secondary structure of the protein sequence using the facilities of DICROPROT 2000.
Other features of DICROPROT 2000 include:
The Calc module is capable of performing the actual calculation of the protein’s structural characteristic using secondary structure information.
The Fold module is capable of assigning a secondary structure to a given protein sequence based on the amino acid sequences and the protein crystal structure.
The View module allows the user to graphically visualize a protein sequence’s secondary structure, as well as its ability to incorporate secondary structure from the Fold module.
Input to DICROPROT 2000 includes:
Primary sequence of the protein(s)
Crystal structure file in either FASTA, PDB, or PQR format
(4.6 GB) (1). If primary sequence of the protein(s) is unavailable, DICROPROT 2000 is capable of providing secondary structure for a given protein structure (2).
Input to DICROPROT 2000 also includes:
For each of the following amino acids; alanine, arginine, asparagine, aspartic acid, cysteine, glutamic acid, glutamine, glycine, histidine, isoleucine, leucine, lysine, methionine, aspartic acid, asparagine, glutamine, glutamic acid, glycine, histidine, proline, serine, threonine, tryptophan, tyrosine, valine, or leucine, use the ‘I’ option, otherwise use the ‘D’ option.
Use the ‘S’ option if a single amino acid is incorrectly assigned (for example, the secondary structure of an amino acid is
DICROPROT 2000 Free
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DICROPROT 2000 Crack+
DICROPROT 2000 is a utility designed for the estimation of protein sequence secondary structure from circular dichroism (CD) experiments. Circular dichroism is an optical technique that measures the differential absorption of a light source by a molecule, and is used in protein-structure analyses and protein-ligand binding interactions. DICROPROT 2000 allows you to perform such analyses on protein sequences derived from DNA sequences in FASTA format or on the sequences themselves in the PDB format. Additionally, DICROPROT 2000 can also be used in order to estimate the protein sequence secondary structure, and provide a graphical representation. Furthermore, the software calculates the helicity and secondary structure characteristics of the protein sequences, and gives results in graphical and tabular formats. The software uses the DICROPROT algorithm to obtain the results.
The most important features of the software are as follows:
– Support for circular dichroism (CD) spectroscopy, including CD curve fitting by minimum and maximum covariance (MCC) algorithms and estimation of the secondary structure composition of the CD spectra.
– Estimation of the secondary structure composition of the CD spectra of the protein sequences from the CD spectra of the set of homologous sequences from the protein sequence alignment.
– Identification of the CD spectrum of the protein sequences from the CD spectra of the set of homologous sequences.
– Enumeration of the CD spectrum of the protein sequences from the CD spectra of the set of homologous sequences in a selected group of amino acid.
– Calculation of the percent helicity and the helical content of the protein sequences.
– Calculation of the helical transverse components of the protein sequences.
– Comparison of the CD spectra of the protein sequences with a selected set of reference spectra.
– Graphical and tabular representation of the results.
– CD curve fitting by minimum and maximum covariance (MCC) algorithms.
DICROPROT 2000 Language:
DICROPROT 2000 is written in Java language. The DICROPROT 2000 main window is designed using the following components:
– The Java Swing.
– The TK Library.
– The Java Calendar and Time Toolkit.
– The Java Report Toolkit.
– The Android User Interface Library.
DICROPROT 2000 Links:
– Website:
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System Requirements For DICROPROT 2000:
Recommended
Windows 7 64-bit or newer
DirectX 11
4 GB of RAM (8 GB if playing in 4K)
2 GB of available hard disk space
Minimum
Windows 8 64-bit or newer
DirectX 9
1 GB of RAM (2 GB if playing in 4K)
1 GB of available hard disk space
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User Ratings (93)
Overall: 90% Like it | 2%
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